End-to-End VAT Compliance for Kenyan Businesses
VAT compliance in Kenya demands precision every month — filing by the 20th, reconciling eTIMS invoices, recovering input tax correctly, and staying audit-ready. APSIS manages the full cycle so you never miss a deadline or leave recoverable VAT on the table.
Our VAT Compliance Services
Monthly VAT Return Filing
We prepare and file your VAT returns on iTax by the 20th of every month — accurately and on time. Nil returns included. Our process includes pre-filing review of output tax, input tax claims, and eTIMS reconciliation to prevent KRA queries.
FilingeTIMS Invoice Reconciliation
Your eTIMS-generated invoices must match your VAT return. We reconcile cumulative eTIMS data against declared output tax monthly — eliminating the #1 KRA audit trigger. Discrepancies are identified and resolved before filing.
eTIMSInput Tax Recovery & Validation
We validate every input tax claim against supplier eTIMS invoices, import documentation, and KRA requirements. Proper classification of exempt, zero-rated, and standard-rated supplies ensures maximum legitimate recovery without audit exposure.
Input TaxKRA VAT Audit Support
If KRA queries your VAT position, we act as your authorised representative — preparing responses, organizing documentation, and negotiating directly with KRA officers. Our proactive compliance reduces audit likelihood; our representation protects you when it happens.
AuditVAT Health Checks & Registration
Independent review of your VAT position — registration status, filing history, input tax claims, and eTIMS compliance. We also handle new VAT registrations and obligation changes on iTax, ensuring correct effective dates and documentation.
Health CheckCross-Border VAT Advisory
Guidance on VAT treatment of imports, exports, and cross-border services — including reverse charge mechanisms, place of supply rules, and regional compliance across Kenya, Uganda, Tanzania, Rwanda, and Zambia.
Cross-BorderWhy Proactive VAT Compliance Matters
Penalties Compound Fast
Ksh 10,000 minimum per late return + 1% monthly interest on unpaid VAT. Six missed returns = Ksh 60,000+ before interest.
Input Tax = Cash Flow
Every shilling of valid input tax recovered is working capital. Missed claims directly reduce your liquidity.
eTIMS Mismatches = Audit Risk
KRA cross-checks eTIMS data against VAT returns automatically. Discrepancies trigger immediate queries.
Deadlines Don't Wait
The 20th of every month is non-negotiable. Proactive management means zero surprises and zero penalties.
Mwenda Mwongera
Finance & Systems LeadMwenda leads our VAT compliance, eTIMS reconciliation, and regional tax work across Kenya, Uganda, Tanzania, Rwanda, and Zambia. His background in data analysis and process optimization ensures audit-ready VAT systems for clients. Read Mwenda's full background on our About page →